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Documentation

• Package vignette
• Gene-set analysis with piano
• Function reference

Quick start

# Load piano and example data:
library(piano)
data("gsa_input")

# Load gene-set collection and take a look at the resulting object:
geneSets <- loadGSC(gsa_input$gsc)
geneSets

# Run gene-set analysis:
gsares <- runGSA(gsa_input$pvals,
                 gsa_input$directions,
                 gsc = geneSets)

# Explore the results in an interactive Shiny app:
exploreGSAres(gsares)